Amber Simulations

This page contains a list of different types of simulations you can perform using the Amber programs.

pH-REMD

Click here for instructions on running replica exchange simulations at constant pH

Editing Topology files using ParmEd

Click here for instructions on using ParmEd to modify topology files

Constant pH MD in Explicit Solvent

Click here for instructions on running constant pH MD in explicit solvent.

Using OpenMM With ParmEd

Click here for instructions on using the OpenMM capabilities built into ParmEd.